rs29857629 SNP Detail

Summary

• ID
  rs29857629
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:7296725 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATACAGA GATATTTGTG
  AGACAAAATA TGATATACAT ATTTTTCTGT GATTTCTTTT TTTTCTATTT CTAGTTGATC
  AGTGCTTTTG ATGCTAAATG CAAAAATATG TGACTGACAC TTTAGTTTTC TAGTGTTCAG
  AGAATAACTA TAAACAATTA AAACATGCAA ATGCTTTATC TAATCCAGAA AAGCTCTGCC
  Y
  GTACTTAATC ATCAGTAGAC TTTGCTTCAG GACACACACA TGCTGTGTGC ACACCATTTC
  TTTCCTTTAC TCTTTCTAAA GGAAACTGGG TTTTATGGAT CACACAGGAC TATGGTAGTC
  GATAGGCAAC ATCGTGAAGA CCTTTTATAA GACATTGAAG GGAACTAAGA CATGCAGAAA
  GTTTTTTTGC TCATGAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48393873	NES12224685	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29857629					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48393873	NES12224685	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:7296725 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9684	CpG island 9684	1034 bp proximal
Gm58896	predicted gene, 58896	1253 bp upstream
Odad2	outer dynein arm docking complex subunit 2	Intron
Tssr152370	transcription start site region 152370	339 bp downstream