rs29858606 SNP Detail

Summary

• ID
  rs29858606
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32450162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATT TAAGTAATGA TGCTTTTAGG
  W
  CCTAAGATTA ACTATGAAAT TCAAG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49576422	NES12853562	PERLEGEN	MM_PANEL2	f	SNP	A	T	T	A	A	T	T	A	T	T		T	T	A		A
ss134749286	ENSMUSSNP4720829	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss320698062	CHEV_3_32294935	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs29858606					SNP	A	T	T	A	A	T	T	A	T	T	T	T	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576422	NES12853562	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32450162 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13056	CpG island 13056	674 bp proximal
Gm56797	predicted gene, 56797	1052 bp upstream
Gm65709	predicted gene, 65709	within coordinates
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	1041 bp upstream
Rr397633	regulatory region 397633	839 bp upstream
Rr574951	regulatory region 574951	1623 bp distal
Rr574952	regulatory region 574952	within coordinates
Rr574953	regulatory region 574953	651 bp proximal
Rr574954	regulatory region 574954	1168 bp proximal
Rr574955	regulatory region 574955	1378 bp proximal
Rr574956	regulatory region 574956	1669 bp proximal
Tssr28746	transcription start site region 28746	1013 bp upstream
Tssr28747	transcription start site region 28747	1094 bp upstream
Tssr28748	transcription start site region 28748	1137 bp upstream
Tssr28749	transcription start site region 28749	1225 bp upstream
Tssr28750	transcription start site region 28750	1255 bp upstream