rs29858607 SNP Detail

Summary

• ID
  rs29858607
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32449793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAATAAGTT AATTCTAATA
  AAGGAAGAAT TATGGTGAAA TTATTTAATT CTGATGCATT TTGGTTTGCT TGCTTCACAG
  TCTAATAATA TAATAATAAG TAACTTTTCT TTTCCTCTAA AGCATTTTTC TTTCAGTATT
  TTAATGATTC TATCCCACAG ATGTGTAACA TACTTTAAAC ATTTAGCAAT ACTGCAGAAA
  R
  AATTCAAGGC TGTAATTCTG TAGTAGGGGA CTTGCTAGCA TACACAAAGT CCCCAGTTTG
  GCCCCTAGCT TAAAAAACAA ACAAACAAAC AAACAAACCC AAAAAACCCA GCTGGGCGTG
  GTTTTAACCC CAGCACTCGG GAGGCAGAGG CAGACGGATT TCTGAGTTCG AGGCCAGCCT
  GGTCTACAAA GTGAGTTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49576423	NES12853608	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs29858607					SNP	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576423	NES12853608	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32449793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13056	CpG island 13056	1043 bp proximal
Gm56797	predicted gene, 56797	1421 bp upstream
Gm65709	predicted gene, 65709	within coordinates
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	1410 bp upstream
Rr397633	regulatory region 397633	1208 bp upstream
Rr574951	regulatory region 574951	1254 bp distal
Rr574952	regulatory region 574952	364 bp proximal
Rr574953	regulatory region 574953	1020 bp proximal
Rr574954	regulatory region 574954	1537 bp proximal
Rr574955	regulatory region 574955	1747 bp proximal
Tssr28746	transcription start site region 28746	1382 bp upstream
Tssr28747	transcription start site region 28747	1463 bp upstream
Tssr28748	transcription start site region 28748	1506 bp upstream
Tssr28749	transcription start site region 28749	1594 bp upstream
Tssr28750	transcription start site region 28750	1624 bp upstream