rs29859804 SNP Detail

Summary

• ID
  rs29859804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90373013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTGA GCCATGCAGT AGGAGGAGAC
  R
  GACAGTGTTG CCATAGTCTG AAGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45370385	mCV24351464	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss146920509	ENSMUSSNP6547376	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G	G
ss320390966	CHEV_2_90382826	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29859804					SNP	A	A	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90373013 () rs orientation: forward

Symbol	Name	Function Class
A630073K07Rik	RIKEN cDNA A630073K07 gene	1837 bp upstream
Ptprj	protein tyrosine phosphatase receptor type J	Intron
Rr397111	regulatory region 397111	15 bp upstream
Rr560526	regulatory region 560526	within coordinates
Rr560527	regulatory region 560527	1421 bp proximal
Tssr25104	transcription start site region 25104	1858 bp upstream
Tssr25105	transcription start site region 25105	129 bp downstream