rs29859958 SNP Detail

Summary

• ID
  rs29859958
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:43648133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA GAGCCCAGAA CTTGTTAGGT
  W
  CCAGGAGTCA ACAGCAGCCC CAGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39125146	mCV22970923	ABI	CRAMUS_MOUSE	f	SNP	A	T	T
ss324328754	CHEV_13_43590026	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29859958					SNP	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:43648133 () rs orientation: forward

Symbol	Name	Function Class
Gm32878	predicted gene, 32878	within coordinates
Gm47683	predicted gene, 47683	within coordinates
Rr283572	regulatory region 283572	334 bp distal
Rr283573	regulatory region 283573	1869 bp proximal
Tssr119503	transcription start site region 119503	663 bp downstream