rs29860112 SNP Detail

Summary

• ID
  rs29860112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172891527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTT TGTGTCTTTT CTGAGAGCCC
  Y
  GTCCTGCTGA TGACCAGGTG ACATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45370705	mCV22952846	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss148328529	ENSMUSSNP288319	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320621364	CHEV_2_172875235	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29860112					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172891527 () rs orientation: forward

Symbol	Name	Function Class
Gm36337	predicted gene, 36337	within coordinates
Gm74627	predicted gene, 74627	within coordinates
Gm74628	predicted gene, 74628	within coordinates
Rr571824	regulatory region 571824	748 bp distal
Rr571825	regulatory region 571825	within coordinates
Rr571826	regulatory region 571826	381 bp proximal
Rr571827	regulatory region 571827	814 bp proximal
Rr571828	regulatory region 571828	1189 bp proximal
Rr571829	regulatory region 571829	1458 bp proximal