rs29860480 SNP Detail

Summary

• ID
  rs29860480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:77195017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA AAAGAAATTT TAAACATTAA
  Y
  ATTGGAATAT GACCAGAAAA TTGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39125358	mCV24822591	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss144698313	ENSMUSSNP1979145	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss324446870	CHEV_13_77186159	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29860480					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:77195017 () rs orientation: forward

Symbol	Name	Function Class
D13Mit231	DNA segment, Chr 13, Massachusetts Institute of Technology 231	845 bp proximal
Rr273760	regulatory region 273760	1217 bp distal
Rr281681	regulatory region 281681	16 bp distal
Slf1	SMC5-SMC6 complex localization factor 1	within coordinates
Tssr123272	transcription start site region 123272	507 bp downstream
Tssr123273	transcription start site region 123273	727 bp downstream