rs29860725 SNP Detail

Summary

• ID
  rs29860725
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164751465 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAACA AATAAAGCCA CCCACCCACA
  Y
  TTCAGCCTTA CAGAGGCCCA GGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45369127	mCV23132975	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss148232881	ENSMUSSNP4397177	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320607078	CHEV_2_164735045	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs29860725					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164751465 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12677	CpG island 12677	949 bp proximal
Rr367365	regulatory region 367365	967 bp upstream
Rr569758	regulatory region 569758	100 bp proximal
Rr569759	regulatory region 569759	208 bp proximal
Rr569760	regulatory region 569760	550 bp proximal
Rr569761	regulatory region 569761	1349 bp proximal
Rr569762	regulatory region 569762	1783 bp proximal
Rr569763	regulatory region 569763	1850 bp proximal
Tssr21686	transcription start site region 21686	1882 bp upstream
Tssr27593	transcription start site region 27593	1630 bp downstream
Tssr27594	transcription start site region 27594	1673 bp downstream
Tssr27595	transcription start site region 27595	1713 bp downstream
Zfp335	zinc finger protein 335	Intron
Zfp335os	zinc finger protein 335, opposite strand	1888 bp upstream