rs29861457 SNP Detail

Summary

• ID
  rs29861457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31463179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTTATGG CAGGATCATT
  TAGAGATTGG TTCATGACCC TAAAAGAGAA TAGGAATTGA AAGTGTACAT AGTTCTAGCC
  CTGAAAGCCC ACCACATTCG CTTGCTTGTG GTGACTAGGA GACTGAAAAG CTGAGAGCTG
  TCAGATGGAA CAGGCAGGTC AGTCACGTGA TGATGCCTCT GTGGTTTTAG AGAGATGACA
  Y
  GGGCCGATCA CATCCTCCTG CCATGACTCT AGATCTCCAG TTCTTCCTCC AGCTGCATTG
  TCTCTGCTAG CCTTTCACAT TTCGCCCTTG CTCATCTCTG GTTTGCTTCC TCCTCAGCTC
  TCAGAGACCA ACAGGTTCAC TTTGCCTCAG TTCATCTAAC TTTTGATTAA GCACATATTT
  GTTCTTGTTT TCTTTTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49575294	NES12862065	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29861457					SNP	T	T	T	T	T	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49575294	NES12862065	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31463179 () rs orientation: forward

Symbol	Name	Function Class
Rr82953	regulatory region 82953	within coordinates