rs29861513 SNP Detail

Summary

• ID
  rs29861513
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:59306391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTACTTA CCAACCCTGG
  GATACTTTGC AGTGGGGTGT TAACTCCACC TAGACATCAG TGTCTGCATA ATAAACTCTG
  TGTCAGGAGG CAGCAATTAT CTAGCTGGAG TCTCCAAGTC CAAAGCTCTG TGCTTTGAAC
  AGTAGGCAAT ACCTTATACA TGCTTGTTAA ACAGATTAGT AAATGGAGTT AACTTTCTTC
  W
  CGATTATTCT AAACGAGTCC TGAGTGAGTT ATCTGTACCT AATGAGAATT AATGGCTTTG
  TAGACTAGCC CGTTTGAATG AAGAGCAGCT AGGAGCTTGC AGGGCAGTTT GCTGATGTGT
  AAGCAGATGT GGTTCTCAAC CACTAACCAC ACGAAATTGG GAAACTCTGA AAATGTACTA
  CCCATTGTAG CAGTAGCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss39621472	mCV23241571	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss147208997	ENSMUSSNP1867329	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs29861513					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:59306391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10086	CpG island 10086	1345 bp proximal
Gm54033	predicted gene, 54033	within coordinates
Gm58413	predicted gene, 58413	within coordinates
Rr538516	regulatory region 538516	1841 bp proximal