rs29861520 SNP Detail

Summary

• ID
  rs29861520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63281403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTTCTTG ACTCAATATG
  TCCACATTAG GAATTTCACC CAAGTGAAAG TGGGGAAAAT GTTTACCTCA GCATTGCTGG
  AAAAACCAAT CCCCCAGATT TTCAGGAGGT GTCTGTGAAT AGGACCAAAA CAGGCCCAGC
  CTGAGGCATT GGGTGGAATT CTCTACAGCC TTTAAAAGGG CTGAAGTAGA GCAAGTGTGG
  Y
  GGAAGTTCTC AGACAGCGTC CGCCAAGGAA ACAAGAGTCC ATGTCCACTG TGGGGTGGTC
  CACATGGACC TGGAAGCCAG TGTCTGTAAT GATTCACAAG ACGCTTGCCA CAGCAGTTAC
  CATGGAGAGT GGCCTCGCTC AGGGAAGCAC AGACTCCTTT CCATTGCTGA CTTTCACATG
  GAGTCCTGTT GCCACAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39126146	mCV25259535	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C		T
ss61818490	NES17756655	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	C	C		C	T	C	C		C
ss149138175	ENSMUSSNP1570530	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
ss324374651	CHEV_13_63234949	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29861520					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61818490	NES17756655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63281403 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	within coordinates
Rr276922	regulatory region 276922	998 bp proximal
Rr276923	regulatory region 276923	1797 bp proximal
Rr284650	regulatory region 284650	198 bp proximal