rs29861646 SNP Detail

Summary

• ID
  rs29861646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74409860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTC CTTTCATGAC TACGCGCTTA
  Y
  CTCACCAGCA TGAGAAGAAC TTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45369431	mCV25093615	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss146763408	ENSMUSSNP3307331	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320348070	CHEV_2_74417573	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29861646					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74409860 () rs orientation: forward

Symbol	Name	Function Class
4930445N08Rik	RIKEN cDNA 4930445N08 gene	within coordinates
Cpgi11782	CpG island 11782	227 bp distal
Lnpk	lunapark, ER junction formation factor	81 bp upstream
Rr559317	regulatory region 559317	1304 bp distal
Rr559318	regulatory region 559318	1165 bp distal
Rr559319	regulatory region 559319	579 bp distal
Rr559320	regulatory region 559320	462 bp distal
Rr559321	regulatory region 559321	within coordinates
Tssr18388	transcription start site region 18388	468 bp downstream
Tssr24610	transcription start site region 24610	562 bp upstream
Tssr24611	transcription start site region 24611	99 bp upstream
Tssr24612	transcription start site region 24612	66 bp upstream
Tssr24613	transcription start site region 24613	52 bp upstream