rs29861932 SNP Detail

Summary

• ID
  rs29861932
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:69663367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGACT ACAAATAGGC AAGTACCTCA
  Y
  TTCCACAGAC ACACACTCAT TCATG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39125759	mCV25122443	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss52650322	NES15460513	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		T	C	C		T	C	C	T		C
ss144563452	ENSMUSSNP5558237	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss324404668	CHEV_13_69654126	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29861932					SNP	C	C	C	C	C	C	T	T	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52650322	NES15460513	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:69663367 () rs orientation: forward

Symbol	Name	Function Class
Gm48676	predicted gene, 48676	1072 bp downstream
Rr273498	regulatory region 273498	1034 bp proximal
Rr277031	regulatory region 277031	167 bp distal
Tent4a	terminal nucleotidyltransferase 4A	within coordinates