rs29862079 SNP Detail

Summary

• ID
  rs29862079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:119497831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCA TAGACACGAA GGTGTGCATC
  Y
  TAAAACACGC CCTATACAAA GTGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39125377	mCV23813993	ABI	CRAMUS_MOUSE	f	SNP	C	T			T
ss52698267	NES15540402	PERLEGEN	MM_PANEL2	f	SNP		T	T	C		T	C	T	T		C	T	T	T		T
ss145469238	ENSMUSSNP5523495	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss324555656	CHEV_13_120150102	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29862079					SNP	C	T	T	C	T	T	C	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52698267	NES15540402	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:119497831 () rs orientation: forward

Symbol	Name	Function Class
Nnt	nicotinamide nucleotide transhydrogenase	within coordinates
Rr270671	regulatory region 270671	1570 bp proximal