rs29862128 SNP Detail

Summary

• ID
  rs29862128
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156020977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATTT ACTTTTGTAA GTTACACGTA
  W
  TGCATCTCTG ATAAGGTAAT CAAGA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45370127	mCV23683879	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	T
ss148067882	ENSMUSSNP4563096	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		T
ss320578043	CHEV_2_156004793	CHEVERUD	SCREENING_POP	f	SNP						T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29862128					SNP	A	A	T	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156020977 () rs orientation: forward

Symbol	Name	Function Class
A930012N16Rik	RIKEN cDNA A930012N16 gene	1520 bp upstream
Cpgi12544	CpG island 12544	263 bp proximal
Gm75045	predicted gene, 75045	541 bp upstream
Rbm39	RNA binding motif protein 39	within coordinates
Rr367341	regulatory region 367341	324 bp upstream
Rr367342	regulatory region 367342	1081 bp upstream
Tssr21144	transcription start site region 21144	528 bp upstream
Tssr27042	transcription start site region 27042	1277 bp upstream
Tssr27043	transcription start site region 27043	915 bp downstream
Tssr27044	transcription start site region 27044	1078 bp downstream