rs29862365 SNP Detail

Summary

• ID
  rs29862365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31461237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATCTGATC TGTTAGATCC
  AATAGGCGGC TTATACTGTC AGCCTAGGCT CATTACAGAT AGATGGAAGA GACTCTACTG
  GGTAAATATG AAACCTCAGA CCATTATCTG CGCATGAAAG AAACAGGAAA CTCATTTTAG
  TATCACGATG GGAAAAGACA AGTTGGTTAG ACTTACTCCA TGCAGGAGAA TTCTTTCAGA
  Y
  TTGCCACTAT CAAATCTTCA AACATTTTTG CTTTCCCTAC CTTGGAGGGG AAACTGGGAA
  GGAGGATAAC CTTTGAAAAG TAAATAAATA AAACAACCAA TGAAAAATTA AAAGAAAAAA
  AGGATTCTGG GACTTTCTGC CTGGTGGGTC TTGATTGTGA GTGGAAGAAA GAACCCACTA
  GAACCAGGAT GTGAGCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49575302	NES12862222	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29862365					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49575302	NES12862222	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31461237 () rs orientation: forward

Symbol	Name	Function Class
Rr82953	regulatory region 82953	1696 bp proximal