rs29862370 SNP Detail

Summary

• ID
  rs29862370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31461063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGTAAG TGCATGCATG
  CCAGTACTCA GCTTGCTCCC TCTACTTTAT ATAGTCCAGG ATCCCCTACC CAAGGAATGG
  TCCCACCACA CAAATAATGA AATCAAGACA ATCCCTTGCA GGCACGCCCA GTGGCTCATC
  TCCCAGGACA CACACACACA CACACACACA GCGATGATCT GATCTGTTAG ATCCAATAGG
  Y
  GGCTTATACT GTCAGCCTAG GCTCATTACA GATAGATGGA AGAGACTCTA CTGGGTAAAT
  ATGAAACCTC AGACCATTAT CTGCGCATGA AAGAAACAGG AAACTCATTT TAGTATCACG
  ATGGGAAAAG ACAAGTTGGT TAGACTTACT CCATGCAGGA GAATTCTTTC AGACTTGCCA
  CTATCAAATC TTCAAACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49575307	NES12862208	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs29862370					SNP	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49575307	NES12862208	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31461063 () rs orientation: forward

Symbol	Name	Function Class
Rr82953	regulatory region 82953	1870 bp proximal