rs29862811 SNP Detail

Summary

• ID
  rs29862811
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154032676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTAGTGCCT CTTTCTCCTG GATGACCTGG TGACGGAATG
  AGTAAATGTT AGCTCAGGAA CCCAACCCTG TAAAGGGGTC ATGAGGGAGG TTCCCCTGTG
  Y
  ACCCCTGCTG GCCCCCAAGC AAACACCAAG ATATACAAAG CCCTGGGAGG GCCCAGGCCC
  CAGAACAGGT GCAGAGGTGA GAGAAGTCGC TTCGCTTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45369833	mCV23868181	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148023908	ENSMUSSNP2357346	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss320569692	CHEV_2_154016492	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29862811					SNP	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154032676 () rs orientation: forward

Symbol	Name	Function Class
Bpifb1	BPI fold containing family B, member 1	62 bp upstream
Rr567774	regulatory region 567774	within coordinates
Rr567775	regulatory region 567775	73 bp proximal
Rr567776	regulatory region 567776	299 bp proximal
Rr567777	regulatory region 567777	1434 bp proximal
Tssr20971	transcription start site region 20971	within coordinates
Tssr20972	transcription start site region 20972	7 bp upstream
Tssr20973	transcription start site region 20973	20 bp upstream
Tssr20974	transcription start site region 20974	50 bp upstream
Tssr20975	transcription start site region 20975	77 bp upstream
Tssr20976	transcription start site region 20976	512 bp upstream