rs29863342 SNP Detail

Summary

• ID
  rs29863342
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32417933 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACAGAGGC AGGCTGAACT
  CTGGCTTCAA GGCTAGCCTG GTCTACACAG TGAGTTCTAG GACAGCCAGG GCTATGTAGA
  GAGAATATGC CTCGAAAAAA AAAAAAAAAA AACAAAAACA ACAACAACAA CAACGAAGTC
  TAACGTCCAT CCTATTAGGA GTATCGTTTA AGCTCTTTTT TTTTTTTGGT CAACAGAATT
  Y
  GGTGTCTTCG GCTACTGAGC TTCCCTGTCT GTGATGAAGA TGTGTAGGCT AGGACACTAA
  CAGTCTTACT AAAATGACTC AAGGACGCTT TAAGAGGGAA AAAAACATTT GTAGACACAC
  AGTGGAGAGG AGCCACTGAC TGGGAAGTCA TTCAGTTAAG AGTGGTTAGT CTTAATATTT
  AGCAACACTT TTCATTAATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49576488	NES12855381	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29863342					SNP	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576488	NES12855381	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32417933 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	1705 bp upstream
Cpgi13055	CpG island 13055	1160 bp proximal
Rr374783	regulatory region 374783	within coordinates
Rr574945	regulatory region 574945	449 bp proximal
Rr574946	regulatory region 574946	867 bp proximal
Rr574947	regulatory region 574947	1684 bp proximal
Rr574948	regulatory region 574948	1884 bp proximal
Rr574949	regulatory region 574949	1885 bp proximal
Tssr28742	transcription start site region 28742	608 bp upstream
Tssr28743	transcription start site region 28743	1127 bp upstream
Tssr28744	transcription start site region 28744	1522 bp upstream
Tssr28745	transcription start site region 28745	1552 bp upstream
Tssr32923	transcription start site region 32923	1360 bp downstream
Tssr32924	transcription start site region 32924	1399 bp downstream
Tssr32925	transcription start site region 32925	1639 bp downstream
Tssr32926	transcription start site region 32926	1824 bp downstream
Tssr32927	transcription start site region 32927	1859 bp downstream
Zmat3	zinc finger matrin type 3	Intron