rs29864170 SNP Detail

Summary

• ID
  rs29864170
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:49314999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TCTGTGAGTT CAAGGCCAGC CTGGTCTACA TAATGAGTTC CAGGACAAAC AGGGTTACAT
  AGTGAGACCC TGTCTTAAAA AAAACAAAAG GAAAAGCTCT CAGGGCTGGA GAGATGGCCC
  GGTTGTTAAA GGTACTTATT GCTTTTCAGA CAGTCAGAGC TCAGACTCCA GGCTTATATC
  AGGGACTTAC AGATGCCTGT AAGTCCTGCT TCAAGAGTTC TGACACCCTC TTCTGGCTTC
  CATGGGTACC TGCACACATC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  W
  CACACACACA CACACACACA CACACACACA CACACACACA CACAAACTAA AATAAATATT
  TTTTAAAAAG AATGCTGTCA GAGGAAAGAG CTATAGGACA ATGCACTGGA CGTAGGCAAG
  ACTTATTCCT GTTTGTGTGG ATTCTATTTT CTTCCTGTAT GCTATTCTGG TATTTACAGA
  CAGACAGCCA CAGCTGTACC TTGTGCTGTG CTAACAAATA GCACTGAACA TCTGCTATAA
  AAATTTCCCA GAGCAGGAGA AAAGCTGAGA GAAATCTTCC AATTATTAGT GTCACTGCTG
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39126638	mCV22580884	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss148995247	ENSMUSSNP2386844	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29864170					SNP	A	?	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:49314999 () rs orientation: forward

Symbol	Name	Function Class
Gm40942	predicted gene, 40942	382 bp downstream
Rr388402	regulatory region 388402	1038 bp downstream
Rr479356	regulatory region 479356	60 bp distal
Rr479357	regulatory region 479357	621 bp proximal