rs29864340 SNP Detail

Summary

• ID
  rs29864340
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:63283731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTCA TTTCTCCATA AGTGTGTGAT
  S
  GCCATTTCTT GCACACATTC TTGCA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39126177	mCV25259522	ABI	CRAMUS_MOUSE	f	SNP		G					C		G
ss61818473	NES17756614	PERLEGEN	MM_PANEL2	f	SNP	G	G	C	G	G	C		C	G	C	G		C	G	G	C		G
ss149138188	ENSMUSSNP5107785	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							G
ss324374654	CHEV_13_63237277	CHEVERUD	SCREENING_POP	f	SNP												G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29864340					SNP	G	G	C	G	G	C	C	C	G	C	G	G	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61818473	NES17756614	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:63283731 () rs orientation: forward

Symbol	Name	Function Class
Aopep	aminopeptidase O	within coordinates
Gm30409	predicted gene, 30409	1404 bp downstream
Rr273239	regulatory region 273239	870 bp proximal
Rr276922	regulatory region 276922	730 bp distal
Rr276923	regulatory region 276923	331 bp distal
Rr284650	regulatory region 284650	1931 bp distal
Rr284651	regulatory region 284651	954 bp proximal