rs29864903 SNP Detail

Summary

• ID
  rs29864903
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:105430060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GGGGGATTCT CACAAGGTCA GGGTGGTTAG TTGTCTTTCT CAGAATTCAG TGTGGGACGG
  GGGCAGGAGA ATTGCTAATC TTGTTGTGGT CATTTCTCTG AGAACAGCTA ATACTGTTTT
  GGCAGCTTGT AGGCTCAGTC ACTTTGACCA CTAAAACTAT GTTTTTTACA TTTGTTTAGT
  CGGCCAGCTT CCTCATCTGG CTTTGCACTT GGCCTGCTAG TACAGTTTGG AAAGTCCTTT
  TCGAAGGGGG AAGGTACTGG GTGGTATTGA ATTCATTTTG GATATTACAT CAGGCAAGTT
  Y
  TAATACCAGC TTCCACAGGC CTGCTTCGTT TTTTTTTTTT TGATAGAATC ACTTTTCTTC
  GTGGGTGCCC CAGCTGTCTG GTCTGTAAAA TGGGATAATA ACTAACCTGC CCACACCGTA
  CTCCTTTGAA GTTACCTAAT AAACGCTCTT ATGGGTGCAC TTAAAACTAT TAGATGCTAC
  AAAAATACGG AAGGTTATCT GGAAAAGCAC AAGGTAACAG CCACATGTTA CTGCTAATTA
  CCATGCTCAG AATAACTTCC ACCCCGGGGA CCCTTGGCTC CACCGGGTCC AGATGCACTT
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss39126383	mCV23451444	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs29864903					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:105430060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6065	CpG island 6065	173 bp proximal
Rnf180	ring finger protein 180	within coordinates
Tssr120943	transcription start site region 120943	1926 bp downstream
Tssr123952	transcription start site region 123952	1614 bp upstream
Tssr123953	transcription start site region 123953	1578 bp upstream
Tssr123954	transcription start site region 123954	537 bp upstream
Tssr123955	transcription start site region 123955	738 bp downstream
Tssr123956	transcription start site region 123956	751 bp downstream
Tssr123957	transcription start site region 123957	797 bp downstream
Tssr123958	transcription start site region 123958	829 bp downstream
Tssr123959	transcription start site region 123959	874 bp downstream
Tssr123960	transcription start site region 123960	1105 bp downstream
Tssr123961	transcription start site region 123961	1267 bp downstream