rs29865511 SNP Detail

Summary

• ID
  rs29865511
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:156715856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGGGTC CACCACCTGA
  TGTCCTGACT CAGTACTGAG ATAGGTGACT GGGCTAGATG TGAGATTTAA ACGGTGTCAT
  TTTGTGTTTG ACCACCAGGT GGCAAAACGG GGGTATGGGG AGGACCTGGC TGTTTGAACA
  CTGAAGTTGG CTGAAAGGAC TTGATGGGAG ATCATGGGAA GATCTGGATT GTCAGTCTTC
  Y
  TCGTGCGTGG GAGTTAGGTG GGGTCTACTG CGGTAAAGCC ATCCAGTGTT CCTCTTGTCA
  ATGCTTTCTG AGCCATCCTA CCATCTGAGA TGTGTTTGCA TTCTGGAAAA GACTTGTGAG
  CGTTCCCAAT ATTTTTTCTC TCCATGGTAG TGATGCTCTC TCTGTCTTTT AGTAGGGCTG
  AGTAGCTGCT GTACTGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45370761	mCV25127089	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss148084936	ENSMUSSNP4353751	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs29865511					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156715856 () rs orientation: forward

Symbol	Name	Function Class
Rab5if	RAB5 interacting factor	373 bp downstream
Rr568378	regulatory region 568378	within coordinates
Rr568379	regulatory region 568379	92 bp distal
Sla2	Src-like-adaptor 2	mRNA-UTR
Tssr21217	transcription start site region 21217	1422 bp downstream