rs29865857 SNP Detail

Summary

• ID
  rs29865857
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32463526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGTCTGT GTCACATAGT
  TAACAAGTAG CATACTAAAG ATTTCCGCTT CTCTGGTTAG TTAGTAAGCA CATAGTAAGC
  AGCATAGTAT CTGGTTCTGG CCTAGAAATG TAACACATCT CATCTTACCA GCCCCAATGA
  GAGGCTTCCG GGGCTAGGTA GCAGAGCCCG CTCTAAAGCT GGCACATGGA GACAAGGGTA
  K
  GCTTTTCTCT TCACGATCAT GGAGGAGCTG CTGCTTCCTT CCCCAGTTGG GATGGGCATT
  AACTGTGTGC TTGCATGAAG GACACGAGTG TCACATGGGA AGGGACAGTG TGGTAAGTTA
  GATTGCTTAC TTTGTCTCTC TTGACTATTT CTGTATACAA AAGAGGTTGG TGTTTTGTAT
  ACAAAAGAGT AAGTTCTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49576403	NES12852542	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29865857					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576403	NES12852542	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32463526 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha			Intron
				Noncoding-Transcript-Variant
Rr574958	regulatory region 574958			within coordinates
Tssr32930	transcription start site region 32930			393 bp upstream