rs29865860 SNP Detail

Summary

• ID
  rs29865860
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32462503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATGATCCT GGAAGAGAAA
  CTGCTGCTTA GGTTGGCTGA ATAGTTTTGT TGGTCCCCAG GTAGCTTGCA GGTTTGGCTG
  TAGCAATTTG TACATTTGTA TTCTTTGTGT CACCCACATG GACACTCAAA CACACAGATA
  TATCCTTTAA ATACATGTAA GTACAAAACA TGTCTATAAA GTGATAGACA AAAGCATTAG
  M
  ACTGTACATT TTGTGGCTGA TTTAAGAGAT TGTTTAAGGA TAATAAACAA GCATGCTTTT
  GAGTAAGTTT ATTTTGAGAT GACTGTGAGT GAGCATGTCT TGGGAACACA AGAGTTTGGT
  TGTCTAGAAT GATGTTGTCT GGCTGGGAGG TAGCAGCATA AACTTGGGTA GTCACAGAAC
  GAAAGACAGT CATAAATCCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49576406	NES12852685	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29865860					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49576406	NES12852685	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32462503 () rs orientation: forward

Symbol	Name	Function Class
Pik3ca	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	within coordinates
Rr574958	regulatory region 574958	337 bp proximal
Tssr32930	transcription start site region 32930	623 bp downstream