rs29866489 SNP Detail

Summary

• ID
  rs29866489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:150630059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTCTCACC ACCCCAACCC
  CCAAAACTTC TCAGCTCTGT CTGCTGGACT GCTAACTCTG TGCAATTAAG CTGGCTTCAA
  ACCCACGGAA ACCCACCAGC CTCTGCCTCC AGAGTGCTGG GATTATTAAG GCGTGTGCCA
  GCTCCACCAG GTCCCCCAGT CCTCCTTATT CTGTTCCGTT TATGTTTCCA GGTAATTGCT
  R
  TTCCTAAATA CACAGGTATG CATATTTGTA TGCTGCACAA TTTTGTGGCT TTTATTTCAT
  CCGAAACCAT TTGTGGCTTC ACTCATAAAC AGGGCTCTGG GTCAGTAATA CATACTGGTG
  CTTTTAAGCT TATGCAGGTA TCATATTTTT ACACATCCCC TGTTGCAAGA ATTTCTCTCT
  CTCTCTCTCT CTCTCTCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45371319	mCV24554243	ABI	CRAMUS_MOUSE	f	SNP	A	G	G	G
ss147950613	ENSMUSSNP3068586	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29866489					SNP	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:150630059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12412	CpG island 12412	767 bp distal
Gm30141	predicted gene, 30141	1445 bp upstream
Gm57834	predicted gene, 57834	480 bp upstream
Pygb	brain glycogen phosphorylase	Intron
Rr397385	regulatory region 397385	1293 bp downstream
Rr567101	regulatory region 567101	1394 bp distal
Rr567102	regulatory region 567102	638 bp proximal
Tssr20709	transcription start site region 20709	1345 bp downstream
Tssr20710	transcription start site region 20710	1322 bp downstream