rs29868873 SNP Detail

Summary

• ID
  rs29868873
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:73949635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAT GACCGATGAT AGGCATGGCT
  S
  CTAGAGTCAC CACCGCAGTA AAGAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	MSM/Ms
ss39624139	mCV23372362	ABI	CRAMUS_MOUSE	f	SNP	G	G	C
ss147453893	ENSMUSSNP2265849	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	MSM/Ms
rs29868873					SNP	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:73949635 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10208	CpG island 10208	543 bp distal
Gm58443	predicted gene, 58443	within coordinates
Gm58445	predicted gene, 58445	58 bp upstream
Me2	malic enzyme 2, NAD(+)-dependent, mitochondrial	1115 bp upstream
Rr353118	regulatory region 353118	within coordinates
Rr405736	regulatory region 405736	834 bp downstream
Tssr153885	transcription start site region 153885	1111 bp upstream
Tssr153886	transcription start site region 153886	1078 bp upstream
Tssr153887	transcription start site region 153887	850 bp upstream
Tssr153888	transcription start site region 153888	770 bp upstream
Tssr153889	transcription start site region 153889	21 bp upstream