rs29869060 SNP Detail

Summary

• ID
  rs29869060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128072169 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCACACGGCA CAGTCTATGT TATACACCTT TTACCACGTT
  AAAAATGAAC AGACATCTAA AACCTAGGAG ATTCTAGGCA GAGACCCCTG TTATCAAGCA
  R
  CGGCAAGGCT TGCCAGCCCT GCTTAGAGGA TGAGAAGTCA GAGGCAGAGA AGCCAAACTC
  CCAGCGCAGC ATCCAGCCTG GCTGGCATTC ACGCACATT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45869891	mCV22305993	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A	G
ss133637231	ENSMUSSNP6690313	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G		G
ss321943867	CHEV_6_128045224	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29869060					SNP	A	A	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128072169 () rs orientation: forward

Symbol	Name	Function Class
Gm55163	predicted gene, 55163	180 bp upstream
Rr639181	regulatory region 639181	within coordinates
Rr639182	regulatory region 639182	184 bp proximal
Tspan9	tetraspanin 9	within coordinates