rs29869310 SNP Detail

Summary

• ID
  rs29869310
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:134486438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCAA ACAGATAAAA CTAGATTAAT
  K
  ATAAATCTAG ATAATGCAGC CTTTT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45372708	mCV25095766	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss147634568	ENSMUSSNP4611465	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320513937	CHEV_2_134470254	CHEVERUD	SCREENING_POP	f	SNP					G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29869310					SNP	G	T	T	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:134486438 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12319	CpG island 12319	158 bp distal
Rr397337	regulatory region 397337	165 bp downstream
Tmx4	thioredoxin-related transmembrane protein 4	397 bp upstream
Tssr26507	transcription start site region 26507	476 bp upstream
Tssr26508	transcription start site region 26508	460 bp upstream
Tssr26509	transcription start site region 26509	409 bp upstream
Tssr26510	transcription start site region 26510	375 bp upstream
Tssr26511	transcription start site region 26511	352 bp upstream
Tssr26512	transcription start site region 26512	330 bp upstream