rs29869401 SNP Detail

Summary

• ID
  rs29869401
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:139438632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATATATCCCA ATTATTCTAC TTAGTAGGCA TCCAAAATAA
  GTGTCACCAG GGCAGTAGAT GTGTGGGAAG CATGAAGACA CTGAGTTTCT AAAGAGATCA
  Y
  ATTACCTTCA CAACGTCCCG GAGGACAGTT TTATAGACAC TGGAAATTCA AATAAAATCT
  GTTAATTTCT AATGTCAGCC TTTCCCTCCT GTTTTATAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45871802	mCV24083678	ABI	CRAMUS_MOUSE	f	SNP		C					T		C
ss48128535	NES11845140	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C		C	C	T	C		C	C	T	C		T
ss133916400	ENSMUSSNP1852849	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							C
ss322019573	CHEV_6_139410155	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29869401					SNP	T	C	C	C	T	C	T	C	C	T	C	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48128535	NES11845140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:139438632 () rs orientation: forward

Symbol	Name	Function Class
Rr640348	regulatory region 640348	330 bp distal