rs29870592 SNP Detail

Summary

• ID
  rs29870592
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106520417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAA TGTCTCTGGC TGGTTTTCTC
  R
  CACAGGACTT TGTCCCTGCC TGTTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46348903	mCV23588580	ABI	CRAMUS_MOUSE	f	SNP		G					A
ss47774019	NES11270992	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A		G	G	G	A		G
ss136939119	ENSMUSSNP3810853	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					A
ss323186499	CHEV_9_106545549	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs29870592					SNP	G	G	G	G	G	G	A	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47774019	NES11270992	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106520417 () rs orientation: forward

Symbol	Name	Function Class
Gm28111	predicted gene 28111	within coordinates
Grm2	glutamate receptor, metabotropic 2	1316 bp downstream
Rr686373	regulatory region 686373	within coordinates
Rr686374	regulatory region 686374	138 bp proximal
Rr686375	regulatory region 686375	766 bp proximal