rs29870954 SNP Detail

Summary

• ID
  rs29870954
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82604118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATAAATC AAGAAGATGG
  AGTAGAGGTG ATGTGGGACA GTGACCCACA ACACACAAGG AAAAGGATTT TCAGTCACTC
  TGAGGACACT TTTCAAAGCC ATTGTCCTAG GAAACACTGC AGAAAAGCGG GTCACGCGCT
  TTATCCACGG CGGACGGGGA TTAAGTGAAG CATTCTTCCC CCCTCCCCCC ATTTGTCCTT
  W
  GTTTCTCTTG CCATTGATTT TGGTTATGAG ACTTCTTTTT CTAAAGGATT ACCCGAAATC
  TCTTCTCCTG TTGGTTTTGA GAGCGCTCCT GGCCCCTTTC TGAGTTTCCA AGGCAGGCTA
  TGGAAAACCA TCAGATTTGT GAGCTGTGGG AGGAAGGCTT GCCATGGGCC AACATTACAG
  TCTTTCTCTG GGGCATGTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39624351	mCV23909277	ABI	CRAMUS_MOUSE	f	SNP	A	A	T	T	T
ss147617001	ENSMUSSNP7153030	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29870954					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82604118 () rs orientation: forward

Symbol	Name	Function Class
D18Nds1	DNA segment, Chr 18, Nuffield Department of Surgery 1	467 bp proximal
Gm58829	predicted gene, 58829	355 bp upstream
Mbp	myelin basic protein	356 bp downstream
Rr541827	regulatory region 541827	1858 bp distal
Tssr152152	transcription start site region 152152	1868 bp downstream
Tssr152153	transcription start site region 152153	1744 bp downstream
Tssr152154	transcription start site region 152154	1721 bp downstream
Tssr152155	transcription start site region 152155	1685 bp downstream
Tssr152156	transcription start site region 152156	1616 bp downstream
Tssr152157	transcription start site region 152157	1538 bp downstream
Tssr152158	transcription start site region 152158	1501 bp downstream
Tssr152159	transcription start site region 152159	1477 bp downstream
Tssr152160	transcription start site region 152160	1431 bp downstream
Tssr152161	transcription start site region 152161	1415 bp downstream
Tssr152162	transcription start site region 152162	1394 bp downstream
Tssr152163	transcription start site region 152163	1377 bp downstream
Tssr152164	transcription start site region 152164	1332 bp downstream
Tssr152165	transcription start site region 152165	1259 bp downstream
Tssr152166	transcription start site region 152166	1223 bp downstream
Tssr152167	transcription start site region 152167	1191 bp downstream
Tssr152168	transcription start site region 152168	1162 bp downstream
Tssr152169	transcription start site region 152169	1109 bp downstream
Tssr152170	transcription start site region 152170	1001 bp downstream
Tssr152171	transcription start site region 152171	957 bp downstream
Tssr152172	transcription start site region 152172	854 bp downstream
Tssr152173	transcription start site region 152173	839 bp downstream
Tssr152174	transcription start site region 152174	805 bp downstream
Tssr152175	transcription start site region 152175	770 bp downstream
Tssr152176	transcription start site region 152176	581 bp downstream
Tssr152177	transcription start site region 152177	401 bp downstream
Tssr154083	transcription start site region 154083	1763 bp upstream
Tssr154084	transcription start site region 154084	1709 bp upstream
Tssr154085	transcription start site region 154085	1452 bp upstream
Tssr154086	transcription start site region 154086	906 bp upstream
Tssr154087	transcription start site region 154087	685 bp upstream
Tssr154088	transcription start site region 154088	656 bp upstream
Tssr154089	transcription start site region 154089	538 bp upstream
Tssr154090	transcription start site region 154090	478 bp upstream