rs29871055 SNP Detail

Summary

• ID
  rs29871055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136803696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAACA ATGCAATGCA AACCCTGAGG
  R
  CATCTTTCCG ACCTGTATAA GGGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss45870918	mCV24050766	ABI	CRAMUS_MOUSE	f	SNP	G	G	G					A	G
ss51454445	NES13991530	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G	G		G	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs29871055					SNP	G	G	G	G	A	G	G	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51454445	NES13991530	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136803696 () rs orientation: forward

Symbol	Name	Function Class
BC049715	cDNA sequence BC049715	928 bp upstream
Cpgi18110	CpG island 18110	871 bp proximal
Rr380176	regulatory region 380176	326 bp upstream
Rr640072	regulatory region 640072	585 bp proximal
Rr640073	regulatory region 640073	1525 bp proximal
Tssr2044	transcription start site region 2044	1759 bp upstream
Tssr59337	transcription start site region 59337	1047 bp upstream
Tssr59338	transcription start site region 59338	1063 bp upstream
Tssr59339	transcription start site region 59339	1101 bp upstream
Tssr59340	transcription start site region 59340	1132 bp upstream
Tssr59341	transcription start site region 59341	1716 bp upstream
Tssr63834	transcription start site region 63834	665 bp upstream
Tssr63835	transcription start site region 63835	602 bp upstream
Tssr63836	transcription start site region 63836	1016 bp downstream
Tssr63837	transcription start site region 63837	1049 bp downstream
Tssr63838	transcription start site region 63838	1068 bp downstream
Tssr63839	transcription start site region 63839	1122 bp downstream
Tssr63840	transcription start site region 63840	1353 bp downstream
Tssr63841	transcription start site region 63841	1426 bp downstream
Tssr63842	transcription start site region 63842	1488 bp downstream
Wbp11	WW domain binding protein 11	within coordinates