rs29871845 SNP Detail

Summary

• ID
  rs29871845
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:144995832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT TTCCTTTCTG CCCTCACTTA
  Y
  AGTTATGGGA GTAACTGGCT ACTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45870716	mCV23990604	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss133960874	ENSMUSSNP6517906	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs29871845					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144995832 () rs orientation: forward

Symbol	Name	Function Class
Bcat1	branched chain aminotransferase 1, cytosolic	within coordinates
Cpgi18152	CpG island 18152	893 bp distal
Gm15687	predicted gene 15687	within coordinates
Gm26666	predicted gene, 26666	within coordinates
Rr145932	regulatory region 145932	831 bp distal
Rr148333	regulatory region 148333	569 bp proximal
Tssr2055	transcription start site region 2055	1027 bp upstream
Tssr59519	transcription start site region 59519	1558 bp downstream
Tssr64036	transcription start site region 64036	1514 bp upstream
Tssr64037	transcription start site region 64037	1464 bp upstream
Tssr64038	transcription start site region 64038	1436 bp upstream
Tssr64039	transcription start site region 64039	1419 bp upstream
Tssr64040	transcription start site region 64040	1400 bp upstream
Tssr64041	transcription start site region 64041	1377 bp upstream
Tssr64042	transcription start site region 64042	1359 bp upstream
Tssr64043	transcription start site region 64043	1301 bp upstream
Tssr64044	transcription start site region 64044	1285 bp upstream
Tssr64045	transcription start site region 64045	1253 bp upstream