rs29871939 SNP Detail

Summary

• ID
  rs29871939
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:52236272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TTTGTCGTGG CTGATATCCT CCTCCGTTTG TCCTTGGTAA TGAATTTGTT CGTAGCGTAT
  TCCCGTTCGA GTTCTTTCAA CTGCACCTTA GTGTAAGGCA CGCGCTTCTT TCTCCCCCTC
  CTATAGGAGC TGGCGTCTGA AGGATGGGAG ACGACGTCTG TAAGATAAGG AAGAAGGCAA
  GTTACTCTGG GAGCCGACCT GAGCCAGAAC ACAGGCGACA GCTCAATGTG AACTGCCGGC
  CTTGCAATGC CTGATTGCTC TTTGCCACGA ATGCTGTACA ATCCAGCCTT CTGCCAAAGC
  Y
  TGGAGCGTTA GTAGGGGGGT ATGGTTAGTT GTGTACTGAA ATGAAATCGC CCAGAGTTCC
  AGTGACCACC CCAATCCGGT CATTCTGCAT GTACAGCGGT CCACACCTTA GCACTCAACA
  GGGTTCAACA CTTCTTTCTG TAGAGCTCGG CTCCTCTCAG CTTGCCCCAA GTCCCAACAT
  TCTATGCTTC TCCAACGAAG CCTTTTTTTT CAGAGAACCA TCAGGGACAA TTTGGTGAGC
  TCAAAATCGA GTCTATTTCC CATCTTGGAG TCAATGTCAA GGGCTTGGGA GGGTGGGGCA
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45871523	mCV22668961	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs29871939					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:52236272 () rs orientation: forward

Symbol	Name	Function Class
9530018H14Rik	RIKEN cDNA 9530018H14 gene	1832 bp upstream
Cpgi17439	CpG island 17439	273 bp proximal
Gm56042	predicted gene, 56042	1867 bp upstream
Hoxa13	homeobox A13	within coordinates
Rr630395	regulatory region 630395	1699 bp distal
Rr630397	regulatory region 630397	1506 bp proximal
Tssr61032	transcription start site region 61032	1493 bp downstream
Tssr61033	transcription start site region 61033	1535 bp downstream