rs29873622 SNP Detail

Summary

• ID
  rs29873622
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:64302991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAATGGGAT AATATTGTAA ACGACAACAG AAACCTTACT
  ACATTGTTTC AAATCCACTA AAATACTTTG TTTCATAGTT GATAGTGAAA GTTTAAAAAA
  W
  AAAAAAAAAA GATATAGCTA TCAGGAACAC TTGAATGAAG GGCTGGGCAA GAGGCCCACA
  GGTTAAACAC TGGCCAATAA TTACTATTCA ACACTAACC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39127292	mCV23508568	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A
ss149161890	ENSMUSSNP5978324	ENSEMBL	ENSEMBL_Sanger	f	SNP	T			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29873622					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:64302991 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5773	CpG island 5773	1510 bp distal
Cpgi5774	CpG island 5774	939 bp distal
Gm47513	predicted gene, 47513	581 bp downstream
Gm61554	predicted gene, 61554	within coordinates
Gm61557	predicted gene, 61557	818 bp downstream
Rr273318	regulatory region 273318	10 bp proximal
Rr281559	regulatory region 281559	590 bp distal
Rr403821	regulatory region 403821	1540 bp downstream
Tssr120196	transcription start site region 120196	1457 bp downstream
Tssr123020	transcription start site region 123020	1988 bp upstream
Tssr123021	transcription start site region 123021	1970 bp upstream
Tssr123022	transcription start site region 123022	1900 bp upstream
Zfp367	zinc finger protein 367	1978 bp upstream