rs29873751 SNP Detail

Summary

• ID
  rs29873751
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:33597360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCG GGCTCCCCGC GGCGATCGCC
  Y
  CCGCGCGGGG AAAGCCCGAG GCTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J
ss39624297	mCV24705914	ABI	CRAMUS_MOUSE	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J
rs29873751					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:33597360 () rs orientation: forward

Symbol	Name	Function Class
Gm10549	predicted gene 10549	within coordinates
Nrep	neuronal regeneration related protein	mRNA-UTR
Rr535507	regulatory region 535507	883 bp distal
Rr535508	regulatory region 535508	134 bp distal
Rr535509	regulatory region 535509	284 bp distal
Rr535510	regulatory region 535510	within coordinates
Tssr152760	transcription start site region 152760	1763 bp upstream
Tssr152761	transcription start site region 152761	864 bp upstream
Tssr152762	transcription start site region 152762	834 bp upstream
Tssr152763	transcription start site region 152763	677 bp upstream
Tssr152764	transcription start site region 152764	649 bp upstream
Tssr152765	transcription start site region 152765	505 bp upstream
Tssr152766	transcription start site region 152766	451 bp upstream
Tssr152767	transcription start site region 152767	403 bp upstream
Tssr152768	transcription start site region 152768	243 bp upstream
Tssr152769	transcription start site region 152769	58 bp downstream