rs29874145 SNP Detail

Summary

• ID
  rs29874145
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118713281 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGA GCTATAATTA CCCAATCTGT
  K
  TGTATCCAGC TATAGCAACT GAAAG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45371754	mCV22801902	ABI	CRAMUS_MOUSE	f	SNP	G	G	T	G
ss147316211	ENSMUSSNP5833789	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss320472444	CHEV_2_118708536	CHEVERUD	SCREENING_POP	f	SNP					T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29874145					SNP	G	G	T	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118713281 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	474 bp proximal
Ivd	isovaleryl coenzyme A dehydrogenase	within coordinates
Rr397218	regulatory region 397218	62 bp upstream
Rr397219	regulatory region 397219	736 bp upstream
Rr563358	regulatory region 563358	1483 bp distal
Rr563359	regulatory region 563359	124 bp proximal
Rr563360	regulatory region 563360	770 bp proximal