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rs29874214 SNP Detail
Summary
  • ID
    rs29874214
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:180828453 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TAGAGACTGT CTCTGTTAGA GCTCTCTCTG ACCCCAAGGC
    TTCGTCTGTC TTCCATCACT CCTCTCCAAA CAGAACACAG GTTGGGAATG ATGAACAACA
    R
    TGCGAGTCAG GACTTGAAAG ACAGACAGCT CCTCAGCTTA CCAAGGGCAG GCTATTCCCT
    ACAGGACCGC TTGGGGGCTC CAGGCACCAT CCAGTGAGC                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
DBA/2J
ss45373352 mCV22912877 ABI CRAMUS_MOUSE f SNP A A G G
ss148398538 ENSMUSSNP1156903 ENSEMBL ENSEMBL_Sanger f SNP A G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
DBA/2J
rs29874214 SNP A A G G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:180828453 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
C330003G01Rik RIKEN cDNA C330003G01 gene within coordinates
Cpgi12916 CpG island 12916 124 bp proximal
Gm75115 predicted gene, 75115 within coordinates
Ppdpf pancreatic progenitor cell differentiation and proliferation factor 587 bp upstream
Rr374383 regulatory region 374383 432 bp upstream
Rr572939 regulatory region 572939 97 bp proximal
Rr572940 regulatory region 572940 616 bp proximal
Rr572941 regulatory region 572941 687 bp proximal
Rr572942 regulatory region 572942 1043 bp proximal
Rr572943 regulatory region 572943 1984 bp proximal
Tssr22287 transcription start site region 22287 615 bp upstream
Tssr22288 transcription start site region 22288 715 bp upstream
Tssr22289 transcription start site region 22289 849 bp upstream
Tssr22290 transcription start site region 22290 937 bp upstream
Tssr22291 transcription start site region 22291 976 bp upstream
Tssr22292 transcription start site region 22292 1119 bp upstream
Tssr22293 transcription start site region 22293 1217 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/22/2025
MGI 6.24
The Jackson Laboratory