rs29874267 SNP Detail

Summary

• ID
  rs29874267
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57798451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAGAACTC CCATGATATG
  CACTAACTGA CAAGTGGATA TTAGTTCAGA AACTTAGAAT ACCCAAGATA CAATTTGCAA
  AACATATGAA ACTCAAGAAG CAGGAAGACC AAAGTGTGGA TATTTTGTTC TTACTTAGAA
  TTGGGGATTA AAATACCCAT GTAGGGGGTT ACAGAAACAA CGTTTGGAGC TGAGATGGAA
  K
  GAAAGATCAT CCAGAGACTG CCCTACCTGG GGATCCATCT CATAAACCGC TACCAAACCC
  AGACACTATT GCATATGCCA GCAAGATTTT GGTGAGAGGA CCCTGATATA GCTGTCTCTT
  GTGAGGCTAT GCAAGTGCCT GGCAAATACA GAAGTAGATG CTTATAGTCA TCTATTAGAT
  GGAACACAGG GTTCCTAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45870850	mCV23275479	ABI	CRAMUS_MOUSE	f	SNP	G	T	T	T
ss133245434	ENSMUSSNP2236308	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs29874267					SNP	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57798451 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr399671	regulatory region 399671			1510 bp upstream
Rr631165	regulatory region 631165			1084 bp proximal
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant