rs29874631 SNP Detail

Summary

• ID
  rs29874631
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:73949291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATCTTCGA ATCCTTGAAA GCAGCAAGGA ACCTACACAT
  ACTCTCTCTC TCTCTTTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  W
  CACACACACA CACACACACT CACACCCCTT CCCATATATG CTCCTACTCT CAGCTAGGAT
  TTTGGAGAAT ATTTATTTTT GTTTCAGAAA CCGTAATCG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss39624000	mCV23372384	ABI	CRAMUS_MOUSE	f	SNP	T	A	A
ss325684972	CHEV_18_73975874	CHEVERUD	SCREENING_POP	f	SNP				A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs29874631					SNP	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:73949291 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10208	CpG island 10208	199 bp distal
Gm58443	predicted gene, 58443	within coordinates
Gm58445	predicted gene, 58445	within coordinates
Me2	malic enzyme 2, NAD(+)-dependent, mitochondrial	771 bp upstream
Rr353118	regulatory region 353118	within coordinates
Rr405736	regulatory region 405736	490 bp downstream
Tssr153885	transcription start site region 153885	767 bp upstream
Tssr153886	transcription start site region 153886	734 bp upstream
Tssr153887	transcription start site region 153887	506 bp upstream
Tssr153888	transcription start site region 153888	426 bp upstream
Tssr153889	transcription start site region 153889	283 bp downstream