rs29875250 SNP Detail

Summary

• ID
  rs29875250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55148408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCTC TGGCCCCACA ACCATCCTGC
  Y
  ATTTAATCTA ATTGTCAACA TGCCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45870864	mCV24062629	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss133207724	ENSMUSSNP4301979	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss321805433	CHEV_6_55121417	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29875250					SNP	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55148408 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	within coordinates
Rr136024	regulatory region 136024	1608 bp distal
Rr136025	regulatory region 136025	193 bp proximal
Rr144444	regulatory region 144444	801 bp distal
Rr144445	regulatory region 144445	196 bp proximal
Rr146343	regulatory region 146343	1992 bp proximal