rs29875868 SNP Detail

Summary

• ID
  rs29875868
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72341014 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTAA GATGAAATAA ACCCTCTCCT
  Y
  CACAAGTTGC TTTTGGTCAT GGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45869674	mCV24086842	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	C	T
ss321821442	CHEV_6_72314025	CHEVERUD	SCREENING_POP	f	SNP						T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29875868					SNP	C	C	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72341014 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17541	CpG island 17541	1476 bp distal
Rnf181	ring finger protein 181	within coordinates
Rr368103	regulatory region 368103	1313 bp downstream
Rr632143	regulatory region 632143	1109 bp distal
Rr632144	regulatory region 632144	1217 bp distal
Rr632145	regulatory region 632145	1192 bp distal
Rr632146	regulatory region 632146	166 bp proximal
Rr632147	regulatory region 632147	702 bp proximal
Rr632148	regulatory region 632148	860 bp proximal
Rr632149	regulatory region 632149	1096 bp proximal
Tssr61441	transcription start site region 61441	1652 bp upstream
Tssr61442	transcription start site region 61442	1614 bp upstream