rs29875929 SNP Detail

Summary

• ID
  rs29875929
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:72290362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC AGGAAATGAC ATGGGGAGTG
  K
  GGGGCGAGAA AGGCAACAGT CTCTC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45870764	mCV25198406	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss133283817	ENSMUSSNP5123931	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		T
ss321821424	CHEV_6_72263373	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29875929					SNP	G	G	G	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72290362 () rs orientation: forward

Symbol	Name	Function Class
D6Mit243	DNA segment, Chr 6, Massachusetts Institute of Technology 243	1516 bp proximal
Gm67669	predicted gene, 67669	48 bp upstream
Rr632128	regulatory region 632128	within coordinates
Sftpb	surfactant associated protein B	within coordinates
Tssr1886	transcription start site region 1886	1175 bp upstream
Tssr57100	transcription start site region 57100	461 bp downstream
Tssr57101	transcription start site region 57101	229 bp upstream
Tssr57102	transcription start site region 57102	320 bp upstream
Tssr57103	transcription start site region 57103	411 bp upstream
Tssr57104	transcription start site region 57104	604 bp upstream
Tssr57105	transcription start site region 57105	802 bp upstream
Tssr57106	transcription start site region 57106	903 bp upstream
Tssr57107	transcription start site region 57107	1003 bp upstream
Tssr57108	transcription start site region 57108	1045 bp upstream
Tssr57109	transcription start site region 57109	1096 bp upstream
Tssr57110	transcription start site region 57110	1132 bp upstream
Tssr57111	transcription start site region 57111	1148 bp upstream
Tssr57112	transcription start site region 57112	1218 bp upstream
Tssr57113	transcription start site region 57113	1354 bp upstream
Tssr57114	transcription start site region 57114	1496 bp upstream
Tssr57115	transcription start site region 57115	1517 bp upstream
Tssr61421	transcription start site region 61421	662 bp downstream
Tssr61422	transcription start site region 61422	1236 bp downstream
Tssr61423	transcription start site region 61423	1284 bp downstream
Tssr61424	transcription start site region 61424	1325 bp downstream
Tssr61425	transcription start site region 61425	1389 bp downstream
Tssr61426	transcription start site region 61426	1401 bp downstream
Tssr61427	transcription start site region 61427	1627 bp downstream