rs29876172 SNP Detail

Summary

• ID
  rs29876172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47260095 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCGTCTGG AGGTGACGAA GTTGAGGGAT CCGCCGAAGT
  CTTTCTCGAC TCGACTTCAC GCGGCGATCA CCCCGCGGAC GGGGTTGATT CGGAGCCACC
  R
  CGTTTGTTTC CGAGGGGTCG TTCGAGATGA AGGCTTCCAA ATGAGACCTA CTTGCGAGGC
  TTCCCGTCGC CGGTACGCTG CACCGTGACA GGGACCCAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39127889	mCV24531928	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss324335500	CHEV_13_47201987	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29876172					SNP	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47260095 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	within coordinates
Dek	DEK proto-oncogene	418 bp upstream
Rr479039	regulatory region 479039	183 bp distal
Rr479040	regulatory region 479040	within coordinates
Tssr119626	transcription start site region 119626	1027 bp downstream
Tssr119627	transcription start site region 119627	208 bp downstream
Tssr119628	transcription start site region 119628	189 bp downstream
Tssr122369	transcription start site region 122369	1242 bp upstream
Tssr122370	transcription start site region 122370	1095 bp upstream
Tssr122371	transcription start site region 122371	997 bp upstream
Tssr122372	transcription start site region 122372	917 bp upstream
Tssr122373	transcription start site region 122373	872 bp upstream
Tssr122374	transcription start site region 122374	744 bp upstream
Tssr122375	transcription start site region 122375	509 bp upstream
Tssr122376	transcription start site region 122376	491 bp upstream
Tssr122377	transcription start site region 122377	448 bp upstream
Tssr122378	transcription start site region 122378	413 bp upstream
Tssr122379	transcription start site region 122379	398 bp upstream
Tssr122380	transcription start site region 122380	386 bp upstream