rs29876321 SNP Detail

Summary

• ID
  rs29876321
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:144635557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTTGTATAC TTTCACAGTA TGTCATACAC GAGGAGATCA
  GAGGACGAGC TATAGGAATC AGTTCTCTGC CCACCATGTA GGTCTTGGGG ATGAAGCTCT
  K
  GTCATCAGGT TTGGCTTTGA GTACTAGCTG TGACTTCTTG CCAGCCCCAT CTTTTATATT
  TTAAAGGGAT CACATTCAGC CCATTTTAAG ATCAATCTC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45869973	mCV23987136	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
ss133954166	ENSMUSSNP877780	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		G
ss322064319	CHEV_6_144638351	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29876321					SNP	T	T	T	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144635557 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr400038	regulatory region 400038			356 bp downstream
Rr640977	regulatory region 640977			1780 bp distal
Rr640978	regulatory region 640978			359 bp distal
Sox5	SRY (sex determining region Y)-box 5			Intron
				Noncoding-Transcript-Variant
Sox5os3	SRY (sex determining region Y)-box 5, opposite strand 3			within coordinates