rs29876518 SNP Detail

Summary

• ID
  rs29876518
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108685456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGG AACTGGAGAC TCCCACCCCG
  Y
  CCCGCCAAAC CTCTCTCGGC CGCGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46349150	mCV25034494	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss136953270	ENSMUSSNP6710792	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss323192890	CHEV_9_108710588	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29876518					SNP	C	T	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108685456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22353	CpG island 22353	within coordinates
Ip6k2	inositol hexaphosphate kinase 2	1920 bp downstream
Nckipsd	NCK interacting protein with SH3 domain	111 bp upstream
Rr192618	regulatory region 192618	256 bp distal
Rr205762	regulatory region 205762	within coordinates
Tssr87162	transcription start site region 87162	83 bp upstream
Tssr87163	transcription start site region 87163	99 bp upstream