rs29876830 SNP Detail

Summary

• ID
  rs29876830
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33018955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTTTCAA TAGCAACCCG
  TTATTCAAAA TAGCCTTTGC AAATATATAT AATTATGTAT GCAGAATGGA CAAAGAACAT
  GAAAAAGTTA CTATTTAGTG TACTGGCATT TCTCAGCAGC TTCTGGCCTT TCTTCCCCCA
  CAGGGTTTTT TTTTTTTAAA TTTATTGTTG TTTTTAATAT ACCATTTAAA ATAACTTTAC
  Y
  AGGAGAAGAG CTATGATAAA GGAACTATTC TGGTAGTGGA TAAATGGTAA CTTCTGTGGC
  TGGTCAGGGT CTGAAAAGCT AATAGCATAG AGATATTGCT TTATTTAGGA ACAGGGGCTG
  GGGGGGGGGC AGCTCTGAAG TTAGAGCAGG CTAGAACTCT AGGTGTGACC TTCAGAATGA
  GTAGTGTGAC CATGAATAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46890190	NES10803655	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29876830					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46890190	NES10803655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33018955 () rs orientation: forward

Symbol	Name	Function Class
Gm37459	predicted gene, 37459	within coordinates
Pex5l	peroxisomal biogenesis factor 5-like	Intron
Rr575039	regulatory region 575039	823 bp proximal
Rr575040	regulatory region 575040	905 bp proximal