rs29876837 SNP Detail

Summary

• ID
  rs29876837
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76373577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATC ATGATCATAT AAGTTCGTAC
  S
  ACTCTGTCAA AGGTCTTGGA TTTGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39624613	mCV25200606	ABI	CRAMUS_MOUSE	f	SNP	G	C	C
ss147533115	ENSMUSSNP2338321	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		C
ss325699770	CHEV_18_76400160	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs29876837					SNP	G	C	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76373577 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	331 bp proximal
Rr540992	regulatory region 540992	584 bp proximal
Rr540993	regulatory region 540993	1206 bp proximal
Smad2	SMAD family member 2	1074 bp upstream
Tssr151989	transcription start site region 151989	797 bp upstream
Tssr151990	transcription start site region 151990	826 bp upstream
Tssr151991	transcription start site region 151991	914 bp upstream
Tssr151992	transcription start site region 151992	1154 bp upstream
Tssr151993	transcription start site region 151993	1386 bp upstream
Tssr151994	transcription start site region 151994	1629 bp upstream