rs29877489 SNP Detail

Summary

• ID
  rs29877489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:33019292 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTAGAG CAGGCTAGAA
  CTCTAGGTGT GACCTTCAGA ATGAGTAGTG TGACCATGAA TAAGGAAATG ACTCTCTCTG
  TGTCCCCAGG GCATTCTGTG GGAGAAATAT TCACTGAGAA GGATTTTGTA GGCTGAGCAG
  CAAGTAAAAT GATAATCTTG GACTGGTACA TAAAGCTGTG CTCAGAGGAA GCTCAGAGTA
  Y
  AGCTACCTGT CAGGGTCCAG GGAGAAGCCA GCTTCTCCTT ATTCCTGTTC TTTTCATGAG
  AGAATGAGCC ACCAAAAGGA CCACTTGGTT AGAAGGATCA TAAAGAACAC AGACTTTCTA
  TATTTAATAC TAATTTAGAT GGGATAATAA TGTAGAATAT TTCCCCCTAT CCTTTTCGAA
  TTTTTAAGAA CTTAACCAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46890199	NES10803658	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs29877489					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46890199	NES10803658	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33019292 () rs orientation: forward

Symbol	Name	Function Class
Gm37459	predicted gene, 37459	within coordinates
Pex5l	peroxisomal biogenesis factor 5-like	Intron
Rr575039	regulatory region 575039	486 bp proximal
Rr575040	regulatory region 575040	568 bp proximal